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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggctcaaacttgcaggacagtttagcatcagtgtgttgacaatgttattgtgttagaggcttaatttgggatgcctcaatgctctatttcagCTATTCTGAAGGCGTCGGATTCTAGTGAACTCGACAGACAAGAATGTGTTTTTTCTACTACGGCTACAGTTCTTGATAATGGAACACAG

Basic information

species Zea mays
transcript GRMZM2G412911_T06
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G412911_T06 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g18730.1 (Oryza sativa), 3'ss of exon 14
gtgggctcaaacttgcaggacagtttagcatcagt-gtgttgacaatgttattgtgttagaggcttaat--ttgggatgcctcaatgctctatttcagCTATTCTGAAGGCGTCGGATTCTAGTGAACTCGACAGACAAGAATGTGTTTTTTCTACTACGGCTACAGTTCTTGATAATGGAACACAG
              | |  | || ||||||||||| ||| || ||||| |   |||||||       ||    || ||||||| | | || |||||||||||||||||||| || || | ||||||||| |||||| ||| ||    ||| |||||  | ||||| |||  | | |||||| |||||
--------------gtaatagagcttagcatcagttgtgctgtcaatgatcccgtgttaggactcacatggcaggcatgcctctaagttccatttcagCTATTCTGAAGGCATCAGACTTTAGTGAACTTGACAGAGAAGGATACCGTTTCTCTACCGCAGCTACGGTTTATAACAATGGAGCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacaatgttattgtgttagaggcttaatttgggatgcctcaatgctctatttcagCTATTCTGAAGGCGTCGGATTCTAGTGAACTCGACAGACAAGAATGTGTTTTTTCTACTACGGCTACAGTTCTTGATAATGGAACACAG
                                            ctctatttc  CT-rich tract
                       ttaattt  TA-rich tract