Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgataattttcttttatttatatttacttgttgagatggttgaaattttgacttcttttccccactttttttctttgtatgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCCTGTTTTGCACTGTTGCAAAAG

Basic information

species Zea mays
transcript GRMZM2G410085_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158489_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g09000.1 (Oryza sativa), 3'ss of exon 5
gtatgttatgataattttcttttatttatatttacttgttgagatggttgaaattttgacttcttttccccactttttttctttgtatgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCCTGTTTTGCACTGTTGCAAAAG
||||| |  ||||| ||| |   | | || ||  |||||||||||  |  ||   || ||   ||         || |   ||| |||||    ||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
gtatgatgcgataaatttgtgcaagtcatgttctcttgttgagatactgaaagccttaaccatttg-----gtgttctggttttctatgc----agGATGAGAAGATTGAATGTTGCCGCTTTTCTAGGGATGGCATGAAACCATTCCTGTTTTGCACCGTTGCAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatggttgaaattttgacttcttttccccactttttttctttgtatgcctacagGATGAGAAGATCGAGTGCTGCCGCTTTTCTAGGGATGGCATGAAACCGTTCCTGTTTTGCACTGTTGCAAAAG
            ttttgac  putative branch site (score: 3)
            ttttgacttcttttcc  CT-rich tract
                                tttttttctttgtat  TA-rich tract