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gtaagtatcagttgaggttttgctgtccttaaaactgccatattatcagtaggatcctgtccaatttttatttattaagaagtgctttaaaacctgatattttgtttatgggtctgtaatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAATGTGAAG
species | Zea mays |
transcript | GRMZM2G389362_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAAT GATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAAEST: gi|32920236|gb|CF025048.1|CF025048
genomic: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAATgtaagtatca ... taatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAA
EST: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAAT GATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAAEST: gi|67026759|gb|CO455508.1|CO455508
genomic: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAATgtaagtatca ... taatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAA
EST: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAAT GATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAAEST: gi|84908456|gb|DW404334.1|DW404334
genomic: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAATgtaagtatca ... taatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAA
EST: GTGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAAT GATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAAEST: gi|32937931|gb|CF042750.1|CF042750
genomic: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAATgtaagtatca ... taatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAA
EST: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAAT GATGATGGCTGCANATGCCCAGATGGATTC
genomic: GAGGATGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTAATgtaagtatca ... taatatgcagGATGATGGCTGCAAATGCCCAGATGGATTC
ttattaagaagtgctttaaaacctgatattttgtttatgggtctgtaatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAATGTGAAG
acctgat putative branch site (score: 300)
tgatattttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcagttgaggttttgctgtccttaaaactgccatattatcagtaggatcctgtccaatttttatttattaagaagtgctttaaaacctgatattttgtttatgggtctgtaatatgcagGATGATGGCTGCAAATGCCCAGATGGATTCAAGGGTGACGGTAGGCACAAATGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA