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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctctctggtctccatggcttattttctcgccagcaaccccacctaagctgatcgttcatgtccatttgttcaccatttcagGTGAAAAAGGTGTCGGGTCCAATGGCAAACCTCTTCACTATAAGGGAACACCATTCCATCGTATTATCCCTGGCTTCATGATTCAGGGCGGTGACATAGT

Basic information

species Zea mays
transcript GRMZM2G371271_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G371271_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os09g36670.1 (Oryza sativa), 3'ss of exon 4
gtattttctct-ctggtctccatggcttattttctcgccagcaaccccacc--taagctgatcgttcatgt--ccatttgttcaccatttcagGTGAAAAAGGTGTCGGGTCCAATGGCAAACCTCTTCACTATAAGGGAACACCATTCCATCGTATTATCCCTGGCTTCATGATTCAGGGCGGTGACATAGT
||||||  ||| |     || ||  ||  |      |  |   | ||  |   | |  ||||  | ||| |  |  | ||||||| ||| |||| ||| | ||  | |||  ||| || ||| ||||||||||||| ||| ||  ||| |||||||||||||| ||||||||||||||||| || ||||||||
gtatttcttcttcctagatctattcctgttacagctgaaattcaaccttctgttcacatgattatccatattgcactctgttcactattgcagGAGAAGAGGGCATTGGGCACAAGGGTAAATCTCTTCACTATAAAGGATCAAGATTTCATCGTATTATCCCAGGCTTCATGATTCAGGGTGGGGACATAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgccagcaaccccacctaagctgatcgttcatgtccatttgttcaccatttcagGTGAAAAAGGTGTCGGGTCCAATGGCAAACCTCTTCACTATAAGGGAACACCATTCCATCGTATTATCCCTGGCTTCATGATTCAGGGCGGTGACATAGT
                   agctgat  putative branch site (score: 4)
                                              ccatttc  putative PPT
                                     atttgtt  TA-rich tract