1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attgaaatttcttgggaactcttgtaatatatttttgtttcttccatttattttctaatattcttttattgtgcttacatgtgtcacctggaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGA
species | Zea mays |
transcript | GRMZM2G366935_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGTTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|71766680|gb|DR964617.1|DR964617
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|76915207|gb|DV165881.1|DV165881
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|71760328|gb|DR958265.1|DR958265
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|24765506|gb|CA400665.1|CA400665
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAAGCAAG TTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|74242829|gb|DT650743.1|DT650743
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAEST: gi|71775054|gb|DR972932.1|DR972932
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
EST: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAG TTCTTCTGTTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
genomic: ATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGATACGGAAATCAAGgtgtgttatt ... gaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGA
atttattttctaatattcttttattgtgcttacatgtgtcacctggaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGA
tgcttac putative branch site (score: 2)
ttttctaatattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaaatttcttgggaactcttgtaatatatttttgtttcttccatttattttctaatattcttttattgtgcttacatgtgtcacctggaatatgtagTTCTTCTGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -tttcttg
- - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacctg