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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttgttgtcttccatttagcttataagttttcactgaaagcatgtggcctactataacttgaactactagcctgattgtatctgtgtgcttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG

Basic information

species Zea mays
transcript GRMZM2G363460_T04
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354170|gb|CD438527.1|CD438527
EST:     CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGCAG                       
genomic: CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGC--G-AGgtaagctgct ... cttttagc
EST: gi|110517843|gb|EE022430.1|EE022430
EST:     TCATTTTCAAGATCCTATGGCGAG                         CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: TCATTTTCAAGATCCTATGGCGAGgtaagctgct ... cttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|20301072|gb|BQ164015.1|BQ164015
EST:     CTACAGCTGGATCATTTTCAAGATCCTATGGCGAG                         CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: CTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... cttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|31355282|gb|CD439639.1|CD439639
EST:     CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAG                         CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... cttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|76281031|gb|DV020599.1|DV020599
EST:     ATCATTTTCAAGATCCTATGGCGAG                         CCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: ATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... cttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|78109255|gb|DV527671.1|DV527671
EST:     GATCATTTTCAAGATCCTATGGCGAGCAG                       
genomic: GATCATTTTCAAGATCCTATGGC--G-AGgtaagctgct ... cttttagc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcctactataacttgaactactagcctgattgtatctgtgtgcttttagcagCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
                                           tgctttt  CT-rich tract
      tactataa  TA-rich tract