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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatatgtgaattgtacctgtacttgtacttttgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT

Basic information

species Zea mays
transcript GRMZM2G353548_T04
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 3'ss of exon 10
tcatatgtgaattgtacctgtact-tgtacttttgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaatt-ttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
|  ||  ||  ||  || || | |  ||| |||  ||    |  |   |  ||  |    |||    ||| || |||||| | || |||  |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||||||| ||||| | |||||||||||||||||||
ttttagatg--tttgacatgaagtgcgtattttatttttgacaaactgtgcagtggattgttgacccttctttgcttactctaaagttaataattattgcagTGAAATGGGTGCCCATTTTTCCCCTTGTGGACGATTTCTGGTAGCATGTGTTGCCTGTTTGCTGCCTCAAACTGAAGGCGACCGTGGTAGCCAATTGCCT

upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA19G35370.3 (Glycine max), 3'ss of exon 8
tcatatgtgaattgtacctgtacttgtact----tttgttgcatcttatgcttgagcagggaattg--tgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGG-CCGTGGTAGCCAATTGCCT
 ||| || | ||| |  |  |||  | | |    ||| ||| || | | |   ||  |   | ||    | ||   | ||| | |  ||| || ||   ||||||||||||||||||| |||||||| ||||| ||  ||||| | |  ||||| ||||||||| || | || || | |||||  |  ||  | |  | || | |  
-catttg-gcattattacattacaggcattatgcttttttggat-tgaagtcagattatatacttaatcggttagctgactcaatg-gaatttgcc--ctttgcagTGAAATGGGTGCTCATTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCCCATATAGAAGCAGATCCAGGATTACAAACTCCA-

upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA03G32620.2 (Glycine max), 3'ss of exon 8
tcatatgtgaattgtacct----gtacttgtacttttgttgcatcttatgcttgagcagggaattg-tgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGG-CCGTGGTAGCCAATTGCCT
 ||| ||  | |  ||| |    |   || ||||||| ||| || | | |   ||      | ||  | | ||   |  ||     ||| || ||   ||||||||||||||||||| |||||||| ||||||||  ||||| | |  ||||| ||||||||| || | ||||| | |||||  |  ||  | |  | || | |  
-catttggcattattacatcacaggcattatactttt-ttggat-tgaagtcagattgtatacttaatcagttagctgattcaatggaatttgcc--ctttgcagTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTGTGCTTCCTCATATAGAAGCAGATCCAGGATTACAAACTCCA-

upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: Vv05s0077g00140.t01 (Vitis vinifera), 3'ss of exon 8
tcatatgtgaattgtacctgtacttgtacttt-tgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaat-tttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT-
| || | |||| |  |   |       |  |  | || ||| ||    ||  |      | |||| |   ||||    |||     ||   ||| |||||||||||||||| ||||||||||| || |||||  ||||| | | |||||| ||||||||  || | |||||    |||| ||  | ||| | |  |  |||  
tgatgt-tgaagtcaataagcttccccatctggtatttcatttttatattatggtccagactgtg-tagtattataggctacatgtttttgaatatttgcagTGAAATGGGAGCCCATTTTTCGCCCTGTGGGAGATTTTTGGCAGCCTGTGTTGCATGCATGCTCCCTCATTTGGAAGCTGATCCTGG-ATCACAGGGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgagcagggaattgtgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
                   atttcatta  TA-rich tract