Sequence
atgc intronic sequence ATGC exonic sequence...tcatatgtgaattgtacctgtacttgtacttttgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 3'ss of exon 10
tcatatgtgaattgtacctgtact-tgtacttttgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaatt-ttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
| || || || || || | | ||| ||| || | | | || | ||| ||| || |||||| | || ||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||||||| ||||| | |||||||||||||||||||
ttttagatg--tttgacatgaagtgcgtattttatttttgacaaactgtgcagtggattgttgacccttctttgcttactctaaagttaataattattgcagTGAAATGGGTGCCCATTTTTCCCCTTGTGGACGATTTCTGGTAGCATGTGTTGCCTGTTTGCTGCCTCAAACTGAAGGCGACCGTGGTAGCCAATTGCCT
upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA19G35370.3 (Glycine max), 3'ss of exon 8
tcatatgtgaattgtacctgtacttgtact----tttgttgcatcttatgcttgagcagggaattg--tgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGG-CCGTGGTAGCCAATTGCCT
||| || | ||| | | ||| | | | ||| ||| || | | | || | | || | || | ||| | | ||| || || ||||||||||||||||||| |||||||| ||||| || ||||| | | ||||| ||||||||| || | || || | ||||| | || | | | || | |
-catttg-gcattattacattacaggcattatgcttttttggat-tgaagtcagattatatacttaatcggttagctgactcaatg-gaatttgcc--ctttgcagTGAAATGGGTGCTCATTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCCCATATAGAAGCAGATCCAGGATTACAAACTCCA-
upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA03G32620.2 (Glycine max), 3'ss of exon 8
tcatatgtgaattgtacct----gtacttgtacttttgttgcatcttatgcttgagcagggaattg-tgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGG-CCGTGGTAGCCAATTGCCT
||| || | | ||| | | || ||||||| ||| || | | | || | || | | || | || ||| || || ||||||||||||||||||| |||||||| |||||||| ||||| | | ||||| ||||||||| || | ||||| | ||||| | || | | | || | |
-catttggcattattacatcacaggcattatactttt-ttggat-tgaagtcagattgtatacttaatcagttagctgattcaatggaatttgcc--ctttgcagTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTGTGCTTCCTCATATAGAAGCAGATCCAGGATTACAAACTCCA-
upper sequence: GRMZM2G353548_T05 (Zea mays), 3'ss of exon 9
lower sequence: Vv05s0077g00140.t01 (Vitis vinifera), 3'ss of exon 8
tcatatgtgaattgtacctgtacttgtacttt-tgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaat-tttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT-
| || | |||| | | | | | | || ||| || || | | |||| | |||| ||| || ||| |||||||||||||||| ||||||||||| || ||||| ||||| | | |||||| |||||||| || | ||||| |||| || | ||| | | | |||
tgatgt-tgaagtcaataagcttccccatctggtatttcatttttatattatggtccagactgtg-tagtattataggctacatgtttttgaatatttgcagTGAAATGGGAGCCCATTTTTCGCCCTGTGGGAGATTTTTGGCAGCCTGTGTTGCATGCATGCTCCCTCATTTGGAAGCTGATCCTGG-ATCACAGGGCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcttgagcagggaattgtgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
atttcatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcatatgtgaattgtacctgtacttgtacttttgttgcatcttatgcttgagcagggaattgtgatttcattacttactatgaacttaccaattttgcagTGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTTGTAGCCTGCGTTGCATGTTTGTTGCCTCAAACAGAAGGTGGCCGTGGTAGCCAATTGCCT
- - - -tgaattg
- - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - tgcttga