1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggtggtggaaaaaaatgtgtccatagaaatggaaaggggttaactatctatattaccaataagtttttccatctgacaagggttacacaactattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGCCCCTTAACATACCTTTTGCATAAACATATTGGATTGTAAAATTAGCTG
species | Zea mays |
transcript | GRMZM2G337819_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG ATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGEST: gi|76011277|gb|DT938447.1|DT938447
genomic: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAGgtaactttta ... actattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTG
EST: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG ATGAAGGTGAGGTATTTTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGEST: gi|88748572|gb|DY532713.1|DY532713
genomic: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAGgtaactttta ... actattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTG
EST: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG ATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGEST: gi|213171190|gb|FM184381.1|FM184381
genomic: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAGgtaactttta ... actattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTG
EST: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG ATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAEST: gi|32790778|gb|CD943014.1|CD943014
genomic: GAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAGgtaactttta ... actattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCA
EST: GATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG ATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTG
genomic: GATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAGgtaactttta ... actattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTG
tatctatattaccaataagtttttccatctgacaagggttacacaactattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGCCCCTTAACATACCTTTTGCATAAACATATTGGATTGTAAAATTAGCTG
atctgac putative branch site (score: 3)
aataagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtggtggaaaaaaatgtgtccatagaaatggaaaggggttaactatctatattaccaataagtttttccatctgacaagggttacacaactattgcagATGAAGGTGAGGTATTCTGCTGGGGATGGAACAAGTATGGCCAGGTGGGTGCCCCTTAACATACCTTTTGCATAAACATATTGGATTGTAAAATTAGCTG
-ggtggtg
- - - - -aaaaaaa
- - - - - - - - - - - catagaaa