1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggcgaaattccatcggatgggcgacatacagatatatatcacctctttttcgctttatttttgtcattaaaaaatatgggttgagcctatcattattgctggcggtttgcccttgttgttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTGGCAGGGGTGGACCCAGGAATGACCTCGGTGTGCCAGATGGAGCAGCAA
species | Zea mays |
transcript | GRMZM2G334225_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTEST: gi|74233594|gb|DT641508.1|DT641508
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTEST: gi|12046148|gb|BF728287.1|BF728287
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTEST: gi|6827571|gb|AW331214.1|AW331214
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTEST: gi|78179029|gb|DV549402.1|DV549402
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAG GGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTEST: gi|6827545|gb|AW331188.1|AW331188
genomic: ATGCCGACGTCGTCGATCTTTGCCGCGTCGGACCCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
EST: CCAATCTTGTACTTTAG GG-TC-GGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
genomic: CCAATCTTGTACTTTAGgtaggcgaaa ... gttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGT
aatatgggttgagcctatcattattgctggcggtttgcccttgttgttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTGGCAGGGGTGGACCCAGGAATGACCTCGGTGTGCCAGATGGAGCAGCAA
ttgttcc CT-rich tract
tatcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcgaaattccatcggatgggcgacatacagatatatatcacctctttttcgctttatttttgtcattaaaaaatatgggttgagcctatcattattgctggcggtttgcccttgttgttccatcagGGATCAGGTGATGTTCGACTCGACGTCGACGATGCGGCGTGACTCGATGGTGGCAGGGGTGGACCCAGGAATGACCTCGGTGTGCCAGATGGAGCAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG