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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatatgtacatgagtgggtacctgggggtgacaatcggattttgctaacatgaactttgtttttttttttttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAGGTTCCAGTTCCGAAGCAGACAGCTAAGACTAGTTTCCAAACAACATCAG

Basic information

species Zea mays
transcript GRMZM2G331032_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G331032_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g46510.1 (Oryza sativa), 3'ss of exon 9
gtaagaatatgtacatga----gtgggtacctgggggtgacaatcggattttgctaacatgaactttgtttttttttttttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAGGTTCCAGTTCCGAAGCAGACAGCTAAGACTAGTTTCCAAACAACATCAG
|||||  |   ||  |||    |||  | | || ||   |  |||   |||| || ||| ||    ||    ||||      | | |||| ||||||||||| |||||||||||||||||||||||||| || || || || || ||||| || || ||||| ||||||||||||||||| ||||| |
gtaagtgtgcatatctgaaattgtgaatgcatgaggcc-attatcacgtttt-ctgacacga----tgaacctttt------acacagGTTAAGAGTGTTTTTGGTGCTAAGATGTTTGCACTTGGTGTTGTCGTCAAAGTCCCTGTTCCAAAACAAACAGCAAAGACTAGTTTCCAAACCACATCTG

upper sequence: GRMZM2G331032_T01 (Zea mays), 3'ss of exon 9
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 3'ss of exon 9
gtaagaatatgtacatgagtgggtacctgggggtgacaatcggattttgctaacatgaactttgtttttttttttttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAGGTTCCAGTTCCGAAGCAGACAGCTAAGACTAGTTTCCAAACAACATCAG
          ||   | | |       |    |  |  ||     ||    | | || | ||   || ||         |  ||||||||||||| || || || || |||||||| ||||| || ||| ||||| ||||||| || ||||||||||| || || |||||||||   |||||||
----------gtttgtaattcacattttaaatgatatgata----ttcaagatcgtgcaattatcttattgacccaatcttcagGTCAAGAGTGTATTTGGCGCAAAAATGTTTGCTCTTGGAGTTGTTATTAAGATTCCAGTACCAAAGCAGACAGCAAAAACGAGTTTCCAAGTTACATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18660565|gb|BM500930.1|BM500930
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|7145566|gb|AW507047.1|AW507047
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|6101968|gb|AW126438.1|AW126438
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|31354959|gb|CD439316.1|CD439316
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|91054998|gb|EB165416.1|EB165416
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|32935086|gb|CF039898.1|CF039898
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|32932355|gb|CF037167.1|CF037167
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|32932405|gb|CF037217.1|CF037217
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
EST: gi|6021406|gb|AW066334.1|AW066334
EST:     TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAA                         GTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG
genomic: TGCCGACAATCAAGGAATTGGGCCGAACACGCATGGAGATCAACGTGAAAgtaagaatat ... tttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggtgacaatcggattttgctaacatgaactttgtttttttttttttgataaagGTCAAGAGTGTTTTCGGTGCTAAGATGTTTGCACTTGGTGTCGTTGTTAAGGTTCCAGTTCCGAAGCAGACAGCTAAGACTAGTTTCCAAACAACATCAG
                              ctttgttttttttttt  CT-rich tract
                         atgaactttgtttttt  TA-rich tract