1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgattcagccttggagataacattgacgtttaactgcttattatcgttgccacactgacattaagacttgctatctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAGATAGAAGGAAACATAGTGGGGGGAAAGGAAGCTTTTGTTTTCTTGTACT
species | Zea mays |
transcript | GRMZM2G329306_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTTTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|211484888|gb|FL049377.1|FL049377
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|32930877|gb|CF035689.1|CF035689
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|113703884|gb|EE681388.1|EE681388
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|211517927|gb|FL479799.1|FL479799
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|149051834|gb|EE155961.2|EE155961
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|78124365|gb|DV542749.1|DV542749
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTTTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|71443878|gb|DR824928.1|DR824928
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|60350322|gb|DN217295.1|DN217295
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|32930670|gb|CF035482.1|CF035482
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|76017867|gb|DT945037.1|DT945037
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|88756258|gb|DY540399.1|DY540399
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTTTGTTTTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|32930642|gb|CF035454.1|CF035454
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|149012518|gb|EE042586.2|EE042586
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATTTGGGGCACATTGGAACAG GAGTCTCATGGGAGTTTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAGEST: gi|211145441|gb|FL467393.1|FL467393
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
EST: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAG GAGTCTCATGGGAGTCTGCTCTGCNNNNNNNCGCAGATTACTGATCTTTAG
genomic: TCCCCCGTCTGAAACTTTGCTTAGCTTAAATCTGGGGCACATTGGAACAGgtctgattca ... tctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAG
tttaactgcttattatcgttgccacactgacattaagacttgctatctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAGATAGAAGGAAACATAGTGGGGGGAAAGGAAGCTTTTGTTTTCTTGTACT
cactgac putative branch site (score: 115)
ttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgattcagccttggagataacattgacgtttaactgcttattatcgttgccacactgacattaagacttgctatctgttgcagGAGTCTCATGGGAGTCTGCTCTGCAAAAAAACGCAGATTACTGATCTTTAGATAGAAGGAAACATAGTGGGGGGAAAGGAAGCTTTTGTTTTCTTGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA