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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgattaggcattttaaactatcacatgctaacctatttcatgttttaacaatccaataagttgtttgtagATATCCAACCTTGAACCGGTGGATACAGATGCAGTCTAATCTTCATCGAGTATCCGAGTCTTCTATAACAGATAAATCCGAAGTCTCTTTGCATCAATCC

Basic information

species Zea mays
transcript GRMZM2G327311_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G327311_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g40990.2 (Oryza sativa), 3'ss of exon 16
--------gtaatgattaggcattttaaactatcacatgctaacctatttcatgttttaacaatccaataagttgtttgtagATATCCAACCTTGAACCGGTGGATACAGATGCAGTCTAATCTTCATCGAGTATCCGAGTCTTCTATAACAGATAAATCCGA------AGTCTCTTTGCATCAATCC
         || ||||||| ||||| |||  || | ||  |||| |      |  |||   |||  | |||||| |||  || || ||||| |||||||| |||||||||||||||| ||| |||||||||||||| || ||| || || ||| | || | ||      |||| | ||||||      
gtactgaactactgattagtcattt-aaatgattatat-ttaactt------tacttttgtaattgactaagttctttacagGTACCCAACATTGAACCGTTGGATACAGATGCAGTGTAACCTTCATCGAGTATCTGAATCTGCTGTATCAGCTGAAACTGACAATGAAGTCACCTTGCAT------

upper sequence: GRMZM2G327311_T02 (Zea mays), 3'ss of exon 9
lower sequence: AT2G25730.2 (Arabidopsis thaliana), 3'ss of exon 15
----------------gtaatgattaggcattttaaact---atcacat--gctaacctatttcatgtt--ttaacaatccaataagttgttt--gtagATATCCAACCTTGAACCGGTGGATACAGATGCAGTCTAATCTTCATCGAGTATCCGAGTCTTCTATAACAGATAAATCCGAAGTCTCTT--TGCATCAATCC
                |   |  ||   | ||| ||  |   ||||  |  | |   || || ||| ||  | |   ||    ||  || | |   ||| ||||| || || ||||| ||||||||||||||| ||||||| |||||||| || || | |  | | |||    || |  ||  ||  |    ||   ||  
gtactgtcaagccaaagagttctttcctcctttcaatttgaaatcaactcggttcctcttttccatcttattcagtgatattttactttttcttcatagGTATCCCACTTTAAACCGATGGATACAGATGCAGACTAATCTGCATCGAGTTTCGGAATTTGTTGTGACAC-CGAAGCAAAAACCTGATGACACACGGATT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatcacatgctaacctatttcatgttttaacaatccaataagttgtttgtagATATCCAACCTTGAACCGGTGGATACAGATGCAGTCTAATCTTCATCGAGTATCCGAGTCTTCTATAACAGATAAATCCGAAGTCTCTTTGCATCAATCC
                  tatttcatgttttaa  TA-rich tract