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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcactgatttttttaatattgcataacagtgaacagtcatttacctagctattgattttgcaaccagtaacactgtatgccacacttctttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCTTCACATAATGGTTCACATAATGGAATTGTAGAAAATAGTCCGTACAGAA

Basic information

species Zea mays
transcript GRMZM2G308570_T02
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937118|gb|DV175047.1|DV175047
EST:     TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACA-G------                         GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: gi|93283332|gb|EB675596.1|EB675596
EST:     TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAA                         GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: gi|78111792|gb|DV530189.1|DV530189
EST:     TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAA                         GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
EST: gi|149102056|gb|EE287526.2|EE287526
EST:     TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACA-G------                         GTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT
genomic: TCACTGCTGGGACGCAGTCAGAGCTGTTCGGTGGAGCTGACAGGTAACAAgtatgtcatg ... tttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagctattgattttgcaaccagtaacactgtatgccacacttctttgcttcagGTTTTTGAGAAGAGGAATATAATCATGGTTATCATGCAGAGCAGTGACTCTTCACATAATGGTTCACATAATGGAATTGTAGAAAATAGTCCGTACAGAA
                     cagtaac  putative branch site (score: 2)
                                       cacttctttgcttc  putative PPT
      tattgatttt  TA-rich tract