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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctcaagcaacattacagactaatgctagtttgtgttatttgagcatctctcactcttatttgtacttatttctgcagGTGACAGATATATTAATGAG

Basic information

species Zea mays
transcript GRMZM2G305254_T04
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481497|gb|EY254329.1|EY254329
EST:     TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATG                         GTGACAGATATATTAATGAG
genomic: TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGgtcagctcaa ... atttctgcagGTGACAGATATATTAATGAG
EST: gi|19057930|gb|BM736597.1|BM736597
EST:     TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATG                         GTGACAGATATATTAATGAG
genomic: TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGgtcagctcaa ... atttctgcagGTGACAGATATATTAATGAG
EST: gi|18963930|gb|BM660710.1|BM660710
EST:     TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATG                         GTGACAGATATATTAATGAG
genomic: TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGgtcagctcaa ... atttctgcagGTGACAGATATATTAATGAG
EST: gi|18963438|gb|BM660435.1|BM660435
EST:     TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATG                         GTGACAGATATATTAATGAG
genomic: TGTTCAACAAATGGTCAATGAAGCCCTCCAACGGGTGCCTAATGATAATGgtcagctcaa ... atttctgcagGTGACAGATATATTAATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctagtttgtgttatttgagcatctctcactcttatttgtacttatttctgcagGTGACAGATATATTAATGAG
                        ctctcac  putative branch site (score: 3)
                                          cttatttct  putative PPT
                                 ttatttgtacttattt  TA-rich tract