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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccttgttagctgtagtaaattttcatgtcttatcaccttaggttacctatgaagaaaggacttgtgtgctcaaccaagagttttgatctaggaagccagacataggagtgctcatttgtctgttttaactctggtagGGTTCTTGAAGGAGCACATGCATCCTTCATGGAGTCAGTGCCTTTCAACACAATATGCACCTTCACACTCTTCCAGCTAATCTATCTGTTGATCGTCTTT

Basic information

species Zea mays
transcript GRMZM2G302559_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302559_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 3'ss of exon 10
gtatgccttgttagctgtagtaaattttcatgtcttatcaccttaggttacctatgaagaaaggacttgtgtgctcaaccaagagttttgatctaggaagccagacataggagtgctcatttgtctgttttaactctggtagGGTTCTTGAAGGAGCACATGCATCCTTCATGGAGTCAGTGCCTTTCAACACAATATGCACCTTCACACTCTTCCAGCTAATCTATCTGTTGATCGTCTTT
                          ||| ||   | |    |||| |  | |   |||  ||   ||| ||||   | ||  |||||   |                |  | |  | ||||||   |  ||| |  |  ||| |||| ||||| || ||||||||||||||||||||||| ||| |||| | |||||   |||||||  | ||||||||  | ||||| ||||||||||  
-----------------------tagttcttgctatgtgtgtttagtt--cttgctaagccagt-tttgagtgcaggaacataagtttcagt----------------actaattattatttgttcttgataaattggacagGCTTCTGGAAGGCGCTCATGCATCCTTCATGGAGTCAGTACCTATCAAGAAAATATCTGCCTTCACTATTTTCCAGCTGGTTTATCTCTTGATCGTCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatctaggaagccagacataggagtgctcatttgtctgttttaactctggtagGGTTCTTGAAGGAGCACATGCATCCTTCATGGAGTCAGTGCCTTTCAACACAATATGCACCTTCACACTCTTCCAGCTAATCTATCTGTTGATCGTCTTT
                                        ttttaac  putative branch site (score: 2)
                                      tgttttaa  TA-rich tract