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gtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA
species | Zea mays |
transcript | GRMZM2G181359_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|32857562|gb|CD997243.1|CD997243
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|67019132|gb|CO447881.1|CO447881
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|31363534|gb|CD447891.1|CD447891
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTTGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|213175255|gb|FM185957.1|FM185957
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|84908648|gb|DW404526.1|DW404526
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: CTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|67021842|gb|CO450591.1|CO450591
genomic: CTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|6031320|gb|AW076177.1|AW076177
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|110202151|gb|EC884048.1|EC884048
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|5871373|gb|AW017844.1|AW017844
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|148933232|gb|EC876883.2|EC876883
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|5607920|gb|AI901587.1|AI901587
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCCCGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAACCGGGATGTATGCCATTCGTGEST: gi|148981607|gb|EE027765.2|EE027765
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTTTGCCCCAACTTTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|37375424|gb|CF624148.1|CF624148
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|60355431|gb|DN222404.1|DN222404
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|148952263|gb|EC898072.2|EC898072
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|67020716|gb|CO449465.1|CO449465
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATA-GGAGCGTCTG-ACANAANCCGGGATGT-TGC-ATTCCTGEST: gi|60399891|gb|DN232701.1|DN232701
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|211115113|gb|FL138970.1|FL138970
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCC-AACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|149102255|gb|EE188154.2|EE188154
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTTTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|32849281|gb|CD988962.1|CD988962
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|37373749|gb|CF623190.1|CF623190
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|40334078|gb|CK368148.1|CK368148
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|60350810|gb|DN217783.1|DN217783
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|6654150|gb|AW267555.1|AW267555
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|60347007|gb|DN213980.1|DN213980
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGCATGCCATTCGTGEST: gi|148928313|gb|EE284946.2|EE284946
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTTTGGCACGGTTTTGCCCCAACTTTACTG GAGCGGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|149107886|gb|EE292246.2|EE292246
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|211115112|gb|FL138969.1|FL138969
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|5706120|gb|AI941896.1|AI941896
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCCCGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAACCGGGATGTATGCCATTCGTGEST: gi|32836704|gb|CD976382.1|CD976382
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|31910877|gb|CD651643.1|CD651643
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|211114332|gb|FL138968.1|FL138968
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGEST: gi|37376686|gb|CF624896.1|CF624896
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgagttgct ... gttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTG
gaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA
ttctcac putative branch site (score: 341)
ctttgtt putative PPT
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgctttgtggtttcagcagaatgtttgtgtttctgcttgattcaattgatttacttgaagactttgcgatagatgatcaggttctcacatagccttgctttgttactccagGAGCGGATATAAGGAGCGTCTGCACAGAAGCCGGGATGTATGCCATTCGTGCCCGCAGGAAAACGGTGACAGAGAAGGATTTTCTCGATGCTGTCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG