1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
species | Zea mays |
transcript | GRMZM2G181151_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATEST: gi|60352515|gb|DN219488.1|DN219488
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATEST: gi|31360502|gb|CD444859.1|CD444859
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATEST: gi|67028686|gb|CO457435.1|CO457435
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATEST: gi|26557381|gb|CA829616.1|CA829616
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
tgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
ttctaat putative branch site (score: 2)
tgcttttt putative PPT
atgtttctaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG