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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 9
agtatttaagatcaacctttgtatttaggta-atcaaatggtaaattg-----atttcatgt-ttgatgtttctaataatgctacatgggcattgtgctt-tttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
        | |||  | ||| | ||    |  |  ||||| |||||||     |||| || | |||   ||   | |||| | ||| ||  ||||||||| | ||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
--------acatctccttttatgttcgactgcaataaatgataaattgctgaaattttatttattgtgattggcactaatacaacacggtaattgtgcttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATATATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 9
--agtatttaagatcaacctttgtatttaggtaatcaaa-tggtaaattgattt-catgtt-tgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
   |||||||      | |||| | |    ||| |  || |   ||| |  ||| ||     | |  ||   |||    |||      | || ||  | |||||||| ||||| ||||||||||| || || ||||| ||||| ||||| || || |||||||| ||||| ||||||||||| || ||||||||  | ||||| |
catgtatttat-----atctttttctcagagtattagaagtaacaaagtattttgcaaacaattagattgacaatggaactattaaccccttctggatcttgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTATCCCGGCTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 9
--------------------------------------------------------------------------------agtatttaagatcaacctt------tgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttcta--ataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
                                                                                |  |||||| ||  || ||      ||  ||| | | ||     |   |   ||  | |      || ||||||  | |||  | ||||    |||    |   |||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |||||||| ||||| || |||||| | ||||| |
gtaatttaccttcaactgttattagtttggaagaagcaacaaaaagataggggacttgaaaccttttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaat-ttgcatgacacttga---tcccgtagGTATCTGCTGCCCGAGAAGAAGTGCCAGGAAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 10
-----agtatttaagatcaacctt-tgtatttaggtaatcaaatg-gtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
      | | ||  | |    |   | |   |   |  |  | |  |  || | | |  |  |   || | || || |||  | ||||    |||    |    ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || |||||| | ||||| |
aatgtgggacttgggttttttccaatatgacttatttttggagtatgagaaataactgaacat---atttctcaaacaat-ttgcatgacacttga---tcccatagGTATCTGCTGCCCGAGAAGAAGTGCCGGGTAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGAGCTGGGAGAATTGAGG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 9
agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtt-----tgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
   |||||   | | |  || |  |  |   || |||  |||| |   | |  ||       | |  ||   |||    |||      | || ||  |  ||||||| ||||| ||||||||||| || || ||||| ||||| || || || || |||||||| ||||| ||||||||||| || ||||||||  | ||||| |
--catttat--ttatctctttttctccgactataaaa-agtaactaagtattttgcaaacaattagattgacaatggaactattgaccccttctggatcctgtagGTATCTGCTGCCCGAGAAGAAGTACCTGGTAGACGTGGGTACCCCGGTTACATGTATACAGATCTTGCAACAATATACGAACGTGCTGGAAGAATTGAGG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 9
agtatttaagatcaacctttg-tatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
      ||| || ||  |||| ||     ||| |       | | || ||  |||||||  |  |  | ||  |   | |     |||| |    | ||||||||| || |||||||||||||| || || || ||||| ||||| || |||||||| |||||||| ||||| || ||||| |||||||||||||| ||||
-----gtaaaatgaatatttgataccggagtagtt---cctttatttcataccatgttttttcctcttcatgtt-tgataataagattgagaaact-gtagGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTATATGTACACTGATCTTGCAACTATTTATGAACGTGCTGGGCGTATAGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 9
--agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
  | |   |   |    ||||||| | |     ||  | |   || ||||||| |        | ||  |||||   || |    | | |  || |    |||||||||| || |||||||| || || || || ||||| ||||| || ||||||||||| ||||| ||||| || ||||| || || || ||||||||||
gtaatgagtttcactgtcctttgtgtatgtcccat-gattcaaaatttgatttaa--------gctttgaataaaatta-acaaacgt-gaactct----agGTTTCTGCTGCTCGAGAAGAAGTTCCTGGAAGACGTGGATATCCGGGGTATATGTATACAGATCTTGCAACTATTTATGAACGCGCGGGACGTATTGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 9
agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattga---tttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
    ||  |  |      |||  | |   ||||||| |     |||||    ||||   |      |  |  |  || | ||      || |      || |||| ||||| ||||||||||| || || || |||||||| |||||||| |||||||||||||||||||| || || ||||| |||||||| ||||||||||
---cttctaattttgttcttgagtatttttaatcaagtaccccattgaattcttcaaactcatcactgatgcttgtgatgcaaactacttattgcaactgcagGTATCTGCTGCCCGAGAAGAAGTTCCCGGGAGGCGTGGGTATCCTGGGTATATGTATACTGATCTGGCGACGATTTATGAACGTGCTGGACGTATTGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 9
agtatttaagatcaacctttgtatttaggtaatcaaat----ggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
  |   || | |  |   |  ||    | ||||| |||      |  |    |  ||   ||  | |  |  |     ||  |   |   |||  |   || |||| ||||||||||| || || || || || |||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||
-cttcataggttttaaaatcata--cggataatcgaatttctattgcaccattcccacacttactttcacctacttgactggaaatgt-ctgttttgactgcagGTATCTGCAGCCCGGGAGGAAGTACCTGGAAGGCGTGGGTATCCTGGGTATATGTATACTGATCTTGCAACAATTTATGAGCGTGCTGGACGTATAGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------------------------------------------------------------------------agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgat---gtttctaataatgctacatgggcattgtgctttttgt---------agGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
                                                                                 | | ||   |||     | || |||| | ||     |  |  ||| | ||  | ||| ||   |    | |   |||||||      ||   || |   |         |||||||||| || || ||||| ||||| ||  | ||||| |||||||| || ||||||||||||||||| || || ||||| |||||||| || || ||||
gtacaagtgtttctcttaaagacttttcgcttggactcctttttcagaagttagctcctgtgaaattctacatgctactccgcagttggtatctgaaatagtttttaagcaaatttgtaatctattcagttggtttttaattaagaccttcagtgtgctacaaattttttccactctcaattcttcaaatagGTTTCTGCTGCTCGTGAAGAAGTGCCTGGGCGTCGTGGATATCCTGGTTACATGTATACTGATCTGGCCACCATTTATGAACGTGCTGGACGAATCGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 8
agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataat-gctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
                                               ||   |||||| | |||| | || |  ||||      |   | ||||| ||||||| ||||| || || || |||||||| ||| | ||||| |||||||| ||||||||||| ||| |||||||||| || ||||||||||| || |||||||
---------------------------------------------gtatggtatgtttcaagtttgtcatgagagctatgataac-cagggctttgtgtagGTGTCTGCCGCTCGTGAGGAGGTGCCTGGTCGTCGTGGATATCCTGGTTATATGTATACAGATTTGGCAACAATTTACGAGCGTGCTGGACGAATTGAAG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 9
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 8
agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtg-ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
                                             ||||   |||||| | |||| | || |   |  |||   |   || |||| ||||||| ||||| || || || |||||||| ||| | ||||| |||||||| ||||||||||| ||| |||||||||| || ||||||||||| || |||||||
------------------------------------------gtatgatcgtatgtttcaagtttttcatgagagt-tatgataaccatggctttgtgtagGTGTCTGCCGCTCGTGAGGAGGTGCCTGGTCGTCGTGGATATCCTGGTTATATGTATACAGATTTGGCAACAATTTACGAGCGTGCTGGACGAATTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30307204|gb|CD001877.1|CD001877
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     GTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: GTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|60352515|gb|DN219488.1|DN219488
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|26557381|gb|CA829616.1|CA829616
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32944615|gb|CF049434.1|CF049434
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     ATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGA-                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: ATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAG                         GTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT
genomic: TACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 643

GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 967

GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 804

GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 808

GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagtt ... ctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG
                  ttctaat  putative branch site (score: 808)
                                           tgcttttt  putative PPT
              atgtttctaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtatttaagatcaacctttgtatttaggtaatcaaatggtaaattgatttcatgtttgatgtttctaataatgctacatgggcattgtgctttttgtagGTTTCTGCAGCCCGAGAAGAGGTGCCAGGTAGGCGTGGTTATCCTGGATATATGTATACTGATCTGGCAACAATATATGAGCGTGCTGGGCGTATTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacatg