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gttagcactgttcactcttcactagacaccaaaataaaatgaatctgtcttatcttttgttaatccccatgtttgaatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
species | Zea mays |
transcript | GRMZM2G178822_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|31361016|gb|CD445373.1|CD445373
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|60352824|gb|DN219797.1|DN219797
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTEST: gi|211493408|gb|FL041695.1|FL041695
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTG GTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... aatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGT
aaaataaaatgaatctgtcttatcttttgttaatccccatgtttgaatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
tgttaat putative branch site (score: 3)
ttatcttttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcactgttcactcttcactagacaccaaaataaaatgaatctgtcttatcttttgttaatccccatgtttgaatgtcttagGTATCGGGCACCAGAAGTCTTGCTCCAGTCATCTGCTTATGATTCTGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG