1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctagagggactatatgacatgatttcatctgaatcagcagctcagttttacttatgtgtgcgccatattgcactgataatagcatgacttggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCG
species | Zea mays |
transcript | GRMZM2G178822_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGEST: gi|31361016|gb|CD445373.1|CD445373
genomic: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: ATCGTGACCTCAAACCTG AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGEST: gi|60352824|gb|DN219797.1|DN219797
genomic: ATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
ttttacttatgtgtgcgccatattgcactgataatagcatgacttggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCG
cactgat putative branch site (score: 349)
tgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagagggactatatgacatgatttcatctgaatcagcagctcagttttacttatgtgtgcgccatattgcactgataatagcatgacttggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTCTCATCATTGCCACCATATACAGAATATGTCTCAACTCG
- - - - - - - - -catgatt
- - - - - - - - - - - - - -tctgaat
- - - - - - - - - - - - - - - - - cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac