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gttaaagattttatgattatatgaaattattacaattttctgccttgtccctaatttaactaatgttacatctattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTTTAGACTCACTTGTGGAGAAGTTTGTTACACCTGAATCATCTCAGGGAG
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGCAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|32933149|gb|CF037961.1|CF037961
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|211488019|gb|FL401529.1|FL401529
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|60399477|gb|DN232289.1|DN232289
genomic: TAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|211296491|gb|FL380959.1|FL380959
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|211371062|gb|FL377775.1|FL377775
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|32933726|gb|CF038538.1|CF038538
genomic: TAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAG GCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTEST: gi|9731923|gb|BE510675.1|BE510675
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
EST: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAT GTTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
genomic: TATTAACTGTGCTGCATGAGCAGTTAAATGTAACAAAAACAGTGCTTGAGgttaaagatt ... tattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTT
tattacaattttctgccttgtccctaatttaactaatgttacatctattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTTTAGACTCACTTGTGGAGAAGTTTGTTACACCTGAATCATCTCAGGGAG
aactaat putative branch site (score: 83)
tctatttt putative PPT
taatttaactaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaagattttatgattatatgaaattattacaattttctgccttgtccctaatttaactaatgttacatctattttacagGCTGTCATTCATCTAGAGTCAATTTTTCCATGCGAAAAGCGTATTGATTTTTTAGACTCACTTGTGGAGAAGTTTGTTACACCTGAATCATCTCAGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT