1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatttgacaaagtacgctttctcaacatctttttttccctgttctcagtattgcatgcttttgccttggtctaaccaactgcctatttgtttgcattcagGCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAGCTGCAAGCTGCTGCACAGGCGCCAGTTATAAGTTCTCCGGGAGTGGCAT
species | Zea mays |
transcript | GRMZM2G178169_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACTCTCGTCATACTGATCTCAATGTAAAG GCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAGEST: gi|6626417|gb|AW257949.1|AW257949
genomic: TACTCTCGTCATACTGATCTCAATGTAAAGgtataaattg ... ttgcattcagGCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAG
EST: ACTGTAAGCTTCATCTGTCATACTCTCGTCATACTGATCTCAATGTAAAG GCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCAAATGCGCAG
genomic: ACTGTAAGCTTCATCTGTCATACTCTCGTCATACTGATCTCAATGTAAAGgtataaattg ... ttgcattcagGCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAG
cagtattgcatgcttttgccttggtctaaccaactgcctatttgtttgcattcagGCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAGCTGCAAGCTGCTGCACAGGCGCCAGTTATAAGTTCTCCGGGAGTGGCAT
gtctaac putative branch site (score: 81)
tttgttt putative PPT
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttgacaaagtacgctttctcaacatctttttttccctgttctcagtattgcatgcttttgccttggtctaaccaactgcctatttgtttgcattcagGCTCATGATGATAGAAGCAGAGACTACACTCTTTCAGACCCTAATGCGCAGCTGCAAGCTGCTGCACAGGCGCCAGTTATAAGTTCTCCGGGAGTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - ttccctg
- - - - - - - - - - - - - - - - - - - - - - - - - ttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactgc