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gtaaaaaaaatatcctgtcactttaccccagccaccaagtattatgaaaaagaaaacaagaataaatatcaaagaagaaaagggggatacttcaatgtgttctgttgctaacttgatgcatcttcaatttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCAGCATTGATGGAAAAATAATACGTTATGCTAGGCCAGATCACCCAACT
species | Zea mays |
transcript | GRMZM2G174990_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCEST: gi|31353713|gb|CD438070.1|CD438070
genomic: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
EST: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCEST: gi|18660585|gb|BM500941.1|BM500941
genomic: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
EST: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCEST: gi|211480218|gb|FK977823.1|FK977823
genomic: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
EST: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCEST: gi|211485991|gb|FK977851.1|FK977851
genomic: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
EST: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGAACAAATTGTGACCATATCEST: gi|211483117|gb|FK977844.1|FK977844
genomic: GTTGCCAAAGATCTGACAAAGGTCCTTGGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAG-ACAAATTGTGACCATATC
EST: TTGCCAAAGATCTGACAAAGGTCCTTGGGAAGGATCCCAACATAATAAAG AGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
genomic: TTGCCAAAGATCTGACAAAGGTCCTT-GGAAGGATCCCAACATAATAAAGgtaaaaaaaa ... atttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCC
gggggatacttcaatgtgttctgttgctaacttgatgcatcttcaatttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCAGCATTGATGGAAAAATAATACGTTATGCTAGGCCAGATCACCCAACT
tttgtcc CT-rich tract
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaaatatcctgtcactttaccccagccaccaagtattatgaaaaagaaaacaagaataaatatcaaagaagaaaagggggatacttcaatgtgttctgttgctaacttgatgcatcttcaatttgtccagAGAGTCCTCAATGACGAGGCAAACTACGGCAGACAAATTGTGACCATATCCAGCATTGATGGAAAAATAATACGTTATGCTAGGCCAGATCACCCAACT
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