1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactttccccattctctgcttttatgattatatattggaatttcgaatggcctgtttgcctgccttcagttttgacaccacccccgagtttctgcaaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAGCAATTTACTCCTAGATGGTTCAACCTGACAGATGTGGTCTCCCCTACA
species | Zea mays |
transcript | GRMZM2G174644_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|213172926|gb|FM184971.1|FM184971
genomic: ATGC-CCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGGCAAGGGCGAEST: gi|31349767|gb|CD434124.1|CD434124
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32828292|gb|CD967970.1|CD967970
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|4646520|gb|AI491662.2|AI491662
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|211409590|gb|FL109891.1|FL109891
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGGCAAGGGCGAEST: gi|37394152|gb|CF634347.1|CF634347
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32831759|gb|CD971437.1|CD971437
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|148955741|gb|EC901435.2|EC901435
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: GGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|211409591|gb|FL109892.1|FL109892
genomic: GGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAACAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGEST: gi|76011092|gb|DT938262.1|DT938262
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGG
EST: TATGCCCTCGAGAAGGGTGACATGTTTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32830590|gb|CD970268.1|CD970268
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|17931542|gb|BM268502.1|BM268502
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|61236535|gb|DN586285.1|DN586285
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|20513038|gb|BQ280224.1|BQ280224
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32840657|gb|CD980338.1|CD980338
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|37388868|gb|CF631649.1|CF631649
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|213167873|gb|FM190575.1|FM190575
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|78116425|gb|DV534812.1|DV534812
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|83278633|gb|DV942641.1|DV942641
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32840658|gb|CD980339.1|CD980339
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGANCAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|211178953|gb|FL452254.1|FL452254
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTYTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|60343663|gb|DN210636.1|DN210636
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|149084041|gb|EE173436.2|EE173436
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|110946891|gb|EE167048.1|EE167048
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTGTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGGTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|76011658|gb|DT938828.1|DT938828
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|5510846|gb|AI857230.1|AI857230
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: GAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|211409594|gb|FL109895.1|FL109895
genomic: GAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAACAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32830755|gb|CD970433.1|CD970433
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: AATGCCCTCGAGAAGGGTGACATGCCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32928518|gb|CF033330.1|CF033330
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32831226|gb|CD970904.1|CD970904
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|50328676|gb|CO523802.1|CO523802
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: AAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|211409595|gb|FL109896.1|FL109896
genomic: AAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTYCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAEST: gi|32834008|gb|CD973686.1|CD973686
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
EST: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAG GCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
genomic: TATGCCCTCGAGAAGGGTGACATGTCTAAGTCCGGGGCAGAGAAGAGCAGgtactttccc ... aaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGA
cctgtttgcctgccttcagttttgacaccacccccgagtttctgcaaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAGCAATTTACTCCTAGATGGTTCAACCTGACAGATGTGGTCTCCCCTACA
ttttgac putative branch site (score: 3)
ctttc putative PPT
aaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttccccattctctgcttttatgattatatattggaatttcgaatggcctgtttgcctgccttcagttttgacaccacccccgagtttctgcaaactttcagGCTCGAGGAACAACAGAGAGCTGAGAAACGAACTCGAGAGGCCAAGGGCGAGCAATTTACTCCTAGATGGTTCAACCTGACAGATGTGGTCTCCCCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG