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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggtttgttacaactaaatatatctgctttgttccaacctacttttaataatttctttaatgtaccataaaaatataacaatttactcactctcctctccgttatagATACAAGCTCACTTTCAAGGCATCAGATGGAACTGAAGAAGCTGAAATGTTTGCATTCGACAATGTTGCTAGGACAATTATTGGGAAACCATGTCCAACA

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211208133|gb|FK984613.1|FK984613
EST:     TCAATGCTCCACATGTAGATCAACRAATTACTGCTTCAG                         ATACAAGCTCACTTTCAAGGCATCAGATGGAACTGAAGAAGCTGAAATGTT
genomic: TCAATGCTCCACATGTAGATCAACAAATTACTGCTTCAGgtctggtttg ... tccgttatagATACAAGCTCACTTTCAAGGCATCAGATGGAACTGAAGAAGCTGAAATGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttaatgtaccataaaaatataacaatttactcactctcctctccgttatagATACAAGCTCACTTTCAAGGCATCAGATGGAACTGAAGAAGCTGAAATGTTTGCATTCGACAATGTTGCTAGGACAATTATTGGGAAACCATGTCCAACA
                               tactcac  putative branch site (score: 1)
                             tttactcactctcctc  CT-rich tract
     taatgtaccataaaaa  TA-rich tract