1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tacgcccagttttgagccgatgtcgtgattatacagcgatagcagttaattgtatttgatggttggagttgctgacccccttcacatgcttgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCAGCAATCAGCCCGTACCAGCTGGAGGCTTTGGAAAGCTGGGAAGAAATCG
species | Zea mays |
transcript | GRMZM2G173928_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCG TTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCAEST: gi|37383606|gb|CF628823.1|CF628823
genomic: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCGgtaagggttc ... tgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCA
EST: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCG TTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCAEST: gi|148929165|gb|EC874655.2|EC874655
genomic: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCGgtaagggttc ... tgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCA
EST: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCG TTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCA
genomic: ACGTAACTGATGCTATGAGAGAATCAAGGGTTCTTGAGTTTTTGCACGCGgtaagggttc ... tgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCA
ttaattgtatttgatggttggagttgctgacccccttcacatgcttgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCAGCAATCAGCCCGTACCAGCTGGAGGCTTTGGAAAGCTGGGAAGAAATCG
tgctgac putative branch site (score: 127)
tatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgcccagttttgagccgatgtcgtgattatacagcgatagcagttaattgtatttgatggttggagttgctgacccccttcacatgcttgtgtctcagTTGGACCCGCTTGCGTACAGAAAGATGGACTTGGAAGAATTCTGTGCGGCAGCAATCAGCCCGTACCAGCTGGAGGCTTTGGAAAGCTGGGAAGAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -gccgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg