1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattccgtttttcatattttaggaaaatccatcactggagcgagttgattctggaaccagtattcatttgtgcttattactttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT
species | Zea mays |
transcript | GRMZM2G172427_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGEST: gi|10191692|gb|BE761768.1|BE761768
genomic: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTG
EST: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGEST: gi|32832594|gb|CD972272.1|CD972272
genomic: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTG
EST: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTAEST: gi|14701180|gb|BI233598.1|BI233598
genomic: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTA
EST: T-ANTTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTACCCGEST: gi|69351242|gb|DR452068.1|DR452068
genomic: TTA-TTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTACCCG
EST: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGEST: gi|83278797|gb|DV942805.1|DV942805
genomic: TTTATTGATGCCACAAGGTCTGGAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTG
EST: GAAATGTTTCCCGTTATATTAGTCACAG TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTG
genomic: GAAATGTTTCCCGTTATATTAGTCACAGgtaattccgt ... ttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTG
ggagcgagttgattctggaaccagtattcatttgtgcttattactttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT
ctttgat putative branch site (score: 156)
ttacttt CT-rich tract
ttattactttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattccgtttttcatattttaggaaaatccatcactggagcgagttgattctggaaccagtattcatttgtgcttattactttgataacagTTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG