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gtccacaatgccatttggaaatgaaatctttccttggtttactggcatatttactaggaaatataagttctgagaataatttgctttaaagtagaattattgtttgtgcttgtcttttatatgtttgatcacatcattacacctccccccttccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTAGGAG
species | Zea mays |
transcript | GRMZM2G172322_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|211393001|gb|FL405406.1|FL405406
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGT-CTACAGATCAN GTAGA-TCTAAAGATGAGGTTGTAAGTA-GCAGTAGAEST: gi|60359695|gb|DN226668.1|DN226668
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGA
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|211356738|gb|FL440505.1|FL440505
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|148956137|gb|EC901907.2|EC901907
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCCCAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTTTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|149101004|gb|EE187101.2|EE187101
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|71319218|gb|DR796369.1|DR796369
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|76285084|gb|DV024652.1|DV024652
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|93017205|gb|EB642725.1|EB642725
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|211356737|gb|FL440504.1|FL440504
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|211428017|gb|FL465135.1|FL465135
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|211428077|gb|FL466325.1|FL466325
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTYTACAGATCAG GTAGAATYTAAAGATGAGGTTGTAAGTAAGCAGTAGATACCATTTTTTCCTEST: gi|76932106|gb|DV172946.1|DV172946
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTEST: gi|60398346|gb|DN231162.1|DN231162
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
EST: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAG GTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
genomic: TCACAATGAGGAGCCCGACTAGAAAAATTCGAAAAAGTTCTACAGATCAGgtccacaatg ... ccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCT
gcttgtcttttatatgtttgatcacatcattacacctccccccttccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTAGGAG
gtttgat putative branch site (score: 105)
tcattacacctccccc putative PPT
ttttatatgtttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccacaatgccatttggaaatgaaatctttccttggtttactggcatatttactaggaaatataagttctgagaataatttgctttaaagtagaattattgtttgtgcttgtcttttatatgtttgatcacatcattacacctccccccttccaatttcagGTAGAATCTAAAGATGAGGTTGTAAGTAAGCAGTAGATAGCATTTTTTCCTAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG