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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttatcctgcctctgcttacccccagaatagcatttgaatccatttttcatctgatcttttttggcttctcttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTACCAGTACACAATACCCATAGCATGACTATGGCGTTGCAGGTTTTCGTTT

Basic information

species Zea mays
transcript GRMZM2G172101_T01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12045945|gb|BF728175.1|BF728175
EST:     TGGATGTGAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|71766798|gb|DR964735.1|DR964735
EST:     TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|31352352|gb|CD436709.1|CD436709
EST:     TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|78180884|gb|DV551257.1|DV551257
EST:     TGGATGTGAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|71766797|gb|DR964734.1|DR964734
EST:     TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|78113529|gb|DV531920.1|DV531920
EST:     TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|60400090|gb|DN232897.1|DN232897
EST:     TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
EST: gi|32932030|gb|CF036842.1|CF036842
EST:     TGGATGTGAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAG                         GGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA
genomic: TGGATGTCAAACAAGCTTCTGACTCCAAATCAAACAAGTCCAAATCAAAGgtgttatcct ... cttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatagcatttgaatccatttttcatctgatcttttttggcttctcttctggcagGGAAATGCTGCTTGAGCTGGATGAGGAACACTATGTTAATTTTTGGGCCTACCAGTACACAATACCCATAGCATGACTATGGCGTTGCAGGTTTTCGTTT
                        atctgat  putative branch site (score: 4)
                              tcttttttggcttctc  CT-rich tract
                 atttttcat  TA-rich tract