1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...aattttatgttatctcaatggattgctgattctagtttcacaaacactatgcacctgcaaatttctgttggcaccaataactggggagttcacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCGAGATCTGATTATGCCTGTTGATGGTGATGATGGATTTTACCCAACGGGA
species | Zea mays |
transcript | GRMZM2G171961_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAGGATTTGATGTTCTAAAACATGGGGCAGAACTGGACATTGATGGCAA GCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCGEST: gi|87151933|gb|DY396722.1|DY396722
genomic: GGAGGATTTGATGTTCTAAAACATGGGCCAGAACTGGACATTGATGGCAAgtatgttaag ... cacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCG
EST: GGAGGATTTGATGTTCTAAAACATGGGGCAGAACTGGACATTGATGGCAA GCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCGEST: gi|22491279|gb|BU051202.1|BU051202
genomic: GGAGGATTTGATGTTCTAAAACATGGGCCAGAACTGGACATTGATGGCAAgtatgttaag ... cacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCG
EST: GGAGGATTTGATGTTCTAAAACATGGGGCAGAACTGGACATTGATGGCAA GCGTGCACGCTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCG
genomic: GGAGGATTTGATGTTCTAAAACATGGGCCAGAACTGGACATTGATGGCAAgtatgttaag ... cacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCG
actatgcacctgcaaatttctgttggcaccaataactggggagttcacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCGAGATCTGATTATGCCTGTTGATGGTGATGATGGATTTTACCCAACGGGA
caataac putative branch site (score: 2)
aaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttatgttatctcaatggattgctgattctagtttcacaaacactatgcacctgcaaatttctgttggcaccaataactggggagttcacatgacagGCGTGCACACTGGATAAAGGCATCTCCTTGGTTACTTGGTGCAAATCCTCGAGATCTGATTATGCCTGTTGATGGTGATGATGGATTTTACCCAACGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - ttatgtt
- - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - gcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcacca