1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagccatgagacacagatacctgtaaactgacaccaggctcaactgcgactcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
species | Zea mays |
transcript | GRMZM2G169516_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|15214479|gb|BI431015.1|BI431015
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGGTGATATTTCGTTCGTTCAAAACGCTGGAGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|71430054|gb|DR811104.1|DR811104
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATTTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTTTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|71324170|gb|DR798788.1|DR798788
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|211501402|gb|FL138828.1|FL138828
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGCTCACTCCTGGTGATATTTCGTTCGTTCAAAACGCTGGAGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAAGATCCAGGGAAAGCAATCEST: gi|71433347|gb|DR814397.1|DR814397
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|71759019|gb|DR956956.1|DR956956
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|211073093|gb|FL464915.1|FL464915
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|94473827|gb|EB702785.1|EB702785
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|91870855|gb|EB401116.1|EB401116
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTTTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|88752600|gb|DY536741.1|DY536741
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|24765189|gb|CA400348.1|CA400348
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGGTGATATTTCGTTCGTTCAAA-CGCTGGAGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATEST: gi|84969902|gb|DV170843.2|DV170843
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGAT
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCEST: gi|6973599|gb|AW438335.1|AW438335
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGGTGATATTTCGTTCGTTCAAAACGCTGGAGTCAAAGCG GCTCTCGTCGGGGAATCCCTCATCAAGCAGGACGATCCAGGGAAAGCAATCEST: gi|71431465|gb|DR812515.1|DR812515
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
EST: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG GTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
genomic: TGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGgtaagccatg ... tctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATC
ctcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
tactgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccatgagacacagatacctgtaaactgacaccaggctcaactgcgactcggtattcctttctcttcgtactgatatgactcctccgttgtgtctgttgtagGTTCTCGTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCTACCTAGAGAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG