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...taacttttgatgttgtatggctatctaaaaagctagtgatttttcccctccagtcacttgatgcactgcaatgtttgacaaaattacaatattcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAGCAGTTATTCACTATAAACCTGAAGCAAGCACATGTTCGGAAATGGATG
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAEST: gi|32833772|gb|CD973450.1|CD973450
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAEST: gi|67031560|gb|CO460309.1|CO460309
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGANGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAA-GAG A-CTT-AAAGGGTTGAGTTTTCCTACA-TT-CATCTGTGGGAC-AAATGCAEST: gi|33102339|gb|CF062299.1|CF062299
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAEST: gi|67018778|gb|CO447527.1|CO447527
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAEST: gi|32834344|gb|CD974022.1|CD974022
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAEST: gi|32937410|gb|CF042229.1|CF042229
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
EST: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAG AACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
genomic: CTGAGGTGTCTGTGAGTGACAAACTTGAAGGCTTCCGTGCAACAAAAGAGgtatgctaca ... attcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCA
ccctccagtcacttgatgcactgcaatgtttgacaaaattacaatattcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAGCAGTTATTCACTATAAACCTGAAGCAAGCACATGTTCGGAAATGGATG
gtttgac putative branch site (score: 264)
tattcct putative PPT
acaaaattacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttttgatgttgtatggctatctaaaaagctagtgatttttcccctccagtcacttgatgcactgcaatgtttgacaaaattacaatattcctgcagAACTTTAAAGGTTTGAGTTTTCCTACAATTTCATCTGTGGGACCAAATGCAGCAGTTATTCACTATAAACCTGAAGCAAGCACATGTTCGGAAATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -tgatgtt
- - - - - - - - - - - - - - - -gctagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa