1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagtttagaacatgggatccaaataggcccttactcttgatcgaaatccccaaaacattgtatttatagcttatatgacagcctgtttgctctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTTTTTCCTACTTGATGAATGAGCAAGCAGAGCTTGCTCTACGGGACGCAA
species | Zea mays |
transcript | GRMZM2G169080_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAG CTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTEST: gi|78021489|gb|DV489876.1|DV489876
genomic: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
EST: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAG CTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTEST: gi|71437024|gb|DR818074.1|DR818074
genomic: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
EST: TTGCATTTAGAGACAGGGATTTTAAGACTGCAAATGACTACTATTCCAAG CTAGTCGCAATGATGTEST: gi|71758345|gb|DR956282.1|DR956282
genomic: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGT
EST: TGCAATTGACTACTATTCCAAG CTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTEST: gi|71774299|gb|DR972177.1|DR972177
genomic: TGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
EST: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAG CTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTEST: gi|101394044|gb|EB818955.1|EB818955
genomic: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
EST: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAG CTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
genomic: TTGCATTTAGAGACAAGGATTTTAAGACTGCAATTGACTACTATTCCAAGgtatcagcat ... tctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGT
atccccaaaacattgtatttatagcttatatgacagcctgtttgctctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTTTTTCCTACTTGATGAATGAGCAAGCAGAGCTTGCTCTACGGGACGCAA
ctctaat putative branch site (score: 25)
tttgctct CT-rich tract
aaaacattgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttagaacatgggatccaaataggcccttactcttgatcgaaatccccaaaacattgtatttatagcttatatgacagcctgtttgctctaatgcagCTAGTCGCAATGATGTCGACGCCTTCGGCTACCGTTTTTGCTAGGCGCAGTTTTTCCTACTTGATGAATGAGCAAGCAGAGCTTGCTCTACGGGACGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -gaacatg
- - - - - - - - - - - - - - - - - - - - - - - - -ccaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattt