1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttccatcattctcgttttttattgtaccttccttgatcgcactatgtggtagttagcaacaactacgttgcagattacagaccatttatatgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
species | Zea mays |
transcript | GRMZM2G168510_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60351240|gb|DN218213.1|DN218213
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|61118196|gb|DN559157.1|DN559157
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|5296161|gb|AI783036.1|AI783036
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60340487|gb|DN207460.1|DN207460
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TG-TGACCCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|91055907|gb|EB166325.1|EB166325
genomic: TGTTGA-CCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|50323772|gb|CO518898.1|CO518898
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|50323794|gb|CO518920.1|CO518920
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|71307283|gb|DR789816.1|DR789816
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: ACCTTGAGTGGGTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|71307284|gb|DR789817.1|DR789817
genomic: ACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|76910910|gb|DV164091.1|DV164091
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: ACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|5871261|gb|AW017732.1|AW017732
genomic: ACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|16917526|gb|BM073324.1|BM073324
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: GAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60400102|gb|DN232909.1|DN232909
genomic: GAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|74236360|gb|DT644274.1|DT644274
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60396848|gb|DN229670.1|DN229670
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|6227240|gb|AW155839.1|AW155839
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60398159|gb|DN230975.1|DN230975
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|5871277|gb|AW017748.1|AW017748
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|4887387|gb|AI677486.1|AI677486
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGCCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCATCCAGCTGGAAGAAAGEST: gi|61118194|gb|DN559155.1|DN559155
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|74236361|gb|DT644275.1|DT644275
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAACAACTGCCCAGTT GTAGCTGATGTAACACATGCTCEST: gi|5770206|gb|AI973380.1|AI973380
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTC
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|31362214|gb|CD446571.1|CD446571
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60357398|gb|DN224371.1|DN224371
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|5847238|gb|AW000317.1|AW000317
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|211183212|gb|FL204166.1|FL204166
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60359317|gb|DN226290.1|DN226290
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|78022942|gb|DV491329.1|DV491329
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|71763878|gb|DR961815.1|DR961815
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|31355531|gb|CD439888.1|CD439888
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|60355225|gb|DN222198.1|DN222198
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|6828178|gb|AW331821.1|AW331821
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|71449637|gb|DR830687.1|DR830687
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|211051797|gb|FL187615.1|FL187615
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|91051935|gb|EB162353.1|EB162353
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGCTTGATEST: gi|33101621|gb|CF061581.1|CF061581
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGCTTGAT
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|61118195|gb|DN559156.1|DN559156
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACTAGCTGGAAGAAAGEST: gi|31361455|gb|CD445812.1|CD445812
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAGEST: gi|4730747|gb|AI649913.1|AI649913
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
EST: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTT GTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
genomic: TTGTTGACCCAAGGAACCTTGAGTGGCTGAGGGAAAGCAACTGCCCAGTTgtaagtattg ... tgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
gtggtagttagcaacaactacgttgcagattacagaccatttatatgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
atttatatgcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccatcattctcgttttttattgtaccttccttgatcgcactatgtggtagttagcaacaactacgttgcagattacagaccatttatatgcatttcagGTAGCTGATGTAACACATGCTCTACAGCAACCAGCTGGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - cattctc
- - - - - - - - - - - - - - - - - - - - -ctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgcag