1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcactgcattattcatggcgcagccttaccgtgccaacagcaaaacagagttatcagatcattcaaccatgttttctgataccctgctgcacgttttcagGGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCAGATGACACACAGAACCAAGCGGAGTACCCTCTCCAGACGTTCCAGCTGC
species | Zea mays |
transcript | GRMZM2G166875_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGACCTGCACTTCCGGCCCGGTGCTGGGTACCTCTACTGCCACCAG GGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCAEST: gi|37375095|gb|CF623961.1|CF623961
genomic: TCTCTGACCTGCACTTCCGGCCCGGTGCTGGGTACCTCTACTGCCACCAGgttcctgtct ... acgttttcagGGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCA
EST: TCTCTGACCTGCACTTCCGGCCCGGTGCTGGGTACCTCTACTGCCACCAG GGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATCCACCCA
genomic: TCTCTGACCTGCACTTCCGGCCCGGTGCTGGGTACCTCTACTGCCACCAGgttcctgtct ... acgttttcagGGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCA
cagagttatcagatcattcaaccatgttttctgataccctgctgcacgttttcagGGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCAGATGACACACAGAACCAAGCGGAGTACCCTCTCCAGACGTTCCAGCTGC
ttctgat putative branch site (score: 3)
cgttttc putative PPT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcactgcattattcatggcgcagccttaccgtgccaacagcaaaacagagttatcagatcattcaaccatgttttctgataccctgctgcacgttttcagGGGAACTGCAAGCACACGATCGTGATAAGGGACATGAGGTTGATTCACCCAGATGACACACAGAACCAAGCGGAGTACCCTCTCCAGACGTTCCAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC