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gtatctgtcgcccaagcgaaagctagttatgttttcctcctgatccattgtcaaatttgacgttcttactgtttatcggttctacttgttatcatctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGACAACACATTGTATACCTTCGGCTGCCTCAGAAGAGCTGAAGAGCTGAG
species | Zea mays |
transcript | GRMZM2G165969_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32834126|gb|CD973804.1|CD973804
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|33091610|gb|CF051604.1|CF051604
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGTTGCAACTCAAGATATTCTGEST: gi|32831923|gb|CD971601.1|CD971601
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32831879|gb|CD971557.1|CD971557
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGGCTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32832217|gb|CD971895.1|CD971895
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: CGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAC GTGGATGTTCTGGAGEST: gi|32832159|gb|CD971837.1|CD971837
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32833886|gb|CD973564.1|CD973564
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGACCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32850028|gb|CD989709.1|CD989709
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAANACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32832780|gb|CD972458.1|CD972458
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32833979|gb|CD973657.1|CD973657
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGEST: gi|32931506|gb|CF036318.1|CF036318
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
EST: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAG GTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
genomic: TGGAAGAGTGCAATGAAGCATTCTTGAAGTTTGATCTGGACTTCGATCAGgtatctgtcg ... catctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTG
ttgtcaaatttgacgttcttactgtttatcggttctacttgttatcatctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGACAACACATTGTATACCTTCGGCTGCCTCAGAAGAGCTGAAGAGCTGAG
ttcttac putative branch site (score: 2)
aaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgtcgcccaagcgaaagctagttatgttttcctcctgatccattgtcaaatttgacgttcttactgtttatcggttctacttgttatcatctgacagGTGGTTGTCCTGGAGACGAAAACTGCAAAGGCTGCAACTCAAGATATTCTGACAACACATTGTATACCTTCGGCTGCCTCAGAAGAGCTGAAGAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA