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gtaagtgtctgtggagatattataactgttatatctttatcgtattctttattttaatgaaaatatatcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTTGTCAAGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAG
species | Zea mays |
transcript | GRMZM2G165747_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAATACAAGGCAAAGAA GATCACCGAGGACGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTEST: gi|31361660|gb|CD446017.1|CD446017
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAA GATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTEST: gi|30087177|gb|CB885385.1|CB885385
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAA GATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTEST: gi|31361689|gb|CD446046.1|CD446046
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAA GATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTEST: gi|33101979|gb|CF061939.1|CF061939
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAATACAAGGCAAAGAA GATCACCGAGGACGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTEST: gi|31355054|gb|CD439411.1|CD439411
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
EST: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAA GATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
genomic: CCTCAGACTGTGGAACTCAGGAGGGTCCGTCGTGAGTACAAGGCAAAGAAgtaagtgtct ... atcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGT
ataactgttatatctttatcgtattctttattttaatgaaaatatatcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTTGTCAAGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAG
ttatatctttatcgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtctgtggagatattataactgttatatctttatcgtattctttattttaatgaaaatatatcgttgcagGATCTCCGAGGAGGAATACATCAGTGCCATCAAGGAAGAAATCAGCAAGGTTGTCAAGATCCAAGAGGAGCTTGACATTGATGTGCTTGTGCATGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA