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gtatgttaccctttcatttgctgactaagtttattttaatttggactctaaaaggataaataattcgttgctttgtcttgtatatatatattttttgaactgcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAGAAACTGATATTTGGTAGTGAGGCGACTCCTTTGCTGATGCACCTCCTCA
species | Zea mays |
transcript | GRMZM2G165692_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAG GAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAGEST: gi|86467944|gb|DY234314.1|DY234314
genomic: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAGgtatgttacc ... gcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAG
EST: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAG GAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAGEST: gi|60395305|gb|DN228174.1|DN228174
genomic: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAGgtatgttacc ... gcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAG
EST: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAG GAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAG
genomic: TATCAAGTCTTATCAAGTGTTTGAAGAGCGACCATAGGGTTCTCAAGAAGgtatgttacc ... gcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAG
taaataattcgttgctttgtcttgtatatatatattttttgaactgcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAGAAACTGATATTTGGTAGTGAGGCGACTCCTTTGCTGATGCACCTCCTCA
tatatatatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttaccctttcatttgctgactaagtttattttaatttggactctaaaaggataaataattcgttgctttgtcttgtatatatatattttttgaactgcttatatagGAGGCATCATGGGCCATGTCAAATATAGCAGCGGGCAGTTTTGAGCATAAGAAACTGATATTTGGTAGTGAGGCGACTCCTTTGCTGATGCACCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC