1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG
species | Zea mays |
transcript | GRMZM2G165351_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|67025992|gb|CO454741.1|CO454741
genomic: TTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|149073466|gb|EE161770.2|EE161770
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|149060142|gb|EE157102.2|EE157102
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|149086581|gb|EE176124.2|EE176124
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|22819684|gb|BU499774.1|BU499774
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|211215781|gb|FL437227.1|FL437227
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: TGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|60356079|gb|DN223052.1|DN223052
genomic: TGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|91054682|gb|EB165100.1|EB165100
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|32843028|gb|CD982709.1|CD982709
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|31406182|gb|CD484914.1|CD484914
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|74234147|gb|DT642061.1|DT642061
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|67024697|gb|CO453446.1|CO453446
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|32848049|gb|CD987730.1|CD987730
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCEST: gi|67017568|gb|CO446317.1|CO446317
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
ttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG
tttgcttttc CT-rich tract
aattatttgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG