Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctaaatattatcatgtttatttttgtatagtattgtttataattgcttcctgttaatggaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTGTCAGCAGACTAGAAAGGGAATCTGGGGTTAAGTTCGAACATATCTCTGC

Basic information

species Zea mays
transcript GRMZM2G164956_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164956_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os09g34910.1 (Oryza sativa), 3'ss of exon 9
gtatgctaaatattatcatgtttatttttgtatagtat-tgtttataattgcttcctgttaa-tggaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTGTCAGCAGACTAGAAAGGGAATCTGGGGTTAAGTTCGAACATATCTCTGC
          ||  |  |  |   ||  | |||  | | || |||| || | | |||  |||      |  ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| || ||| | |||| |||||||||| |||||||| || || ||||||||||||||
---------gtaggagtaattcggttactatattttttctgcttatgatggttaccttctaagcaatgtgttttgattttcagGCAATACTGGTGTTGCTGTCATGCTTTTTGAACCCAGATATAAGTTCAATGTGAACAGAATAGAAAGGGAGTCTGGGGTCAAATTTGAACATATCTCTGC

upper sequence: GRMZM2G164956_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G38680.1 (Glycine max), 3'ss of exon 9
------gtatgctaaatattatcatgtttatttttgtatagtattgttta--taattgcttcctgttaatggaatcatttgatttt----cagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTGTCAGCAGACTAGAAAGGGAATCTGGGGTTAAGTTCGAACATATCTCTGC---
       ||    |  |  |||   | ||| | | | || ||  | ||    | || | ||   | | ||    |  |||  ||||    ||||||||||||| |||||||||||||||||||| || | |   |  |  |   |    ||| ||||||| || || || || || || |||||  | || ||   
gtatttctacaggatttgctattg-gcttactatgggattgtgatattggagttatcgatttaaggttatactgtggttttgtttttattcagGTAATACTGGGGTTGCTGTCATGCTTTATGATCCAAAA---AGATCTAACATACCTAGAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACGTATCCGCCCC

upper sequence: GRMZM2G164956_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 9
gtatgct---aaatattatcatgtttatttttgtatagtattgtttataattgcttcctgttaatggaatcatttgatttt----cagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTGTCAGCAGACTAGAAAGGGAATCTGGGGTTAAGTTCGAACATATCTCTGC---
||||  |   |    ||   ||   | |  |  | |  |||||    || |   ||   | | ||    |  |||| ||||    ||||||||||||| |||||||| ||||||||||| || | |   |  |  |   |    ||| |||| || || ||||| || || || |||||  | |||||   
gtatctttacaggatttgctattggtttactattgtgatattggagttattgattttaaggttatactgtggtttggtttttattcagGTAATACTGGGGTTGCTGTTATGCTTTATGACCCAAAA---AGATCGAACATATCTAGAATAGAGAGAGAGTCTGGTGTAAAATTTGAACACGTATCTGCTCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491136|gb|BU051059.1|BU051059
EST:     CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
EST: gi|32928427|gb|CF033239.1|CF033239
EST:     CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA
EST: gi|32846981|gb|CD986662.1|CD986662
EST:     CCGTGACGTTGAAGCTTACACACACCGGTCAGGTCGGACAGGGGGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA
EST: gi|19272557|gb|BM888813.1|BM888813
EST:     CCGAGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
EST: gi|32929175|gb|CF033987.1|CF033987
EST:     CCGAGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGT
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGT
EST: gi|161407373|gb|DW042376.1|DW042376
EST:     CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAA
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAA
EST: gi|87153206|gb|DY397995.1|DY397995
EST:     CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTG
EST: gi|32928455|gb|CF033267.1|CF033267
EST:     CCGTGACGTTGAAGCTTACATACACCGGTCGGGTCGGACAGGGAGAGCAG                         GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA
genomic: CCGTGACGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatgctaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtatagtattgtttataattgcttcctgttaatggaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGTACAGTGTCAGCAGACTAGAAAGGGAATCTGGGGTTAAGTTCGAACATATCTCTGC
                                                ttttc  CT-rich tract
     atagtattgtttataa  TA-rich tract