Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattcccttttctcatctcgaatagtaatttacttgtgtacacagaatttgttttgctgcactaaatgatttggcctctccctatatagtccttatagcatgtcatgacttgcgagcaatgcacatgtttttctttctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA

Basic information

species Zea mays
transcript GRMZM2G163594_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163594_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 13
gttattcccttttctcatctcgaatag---taatttacttgtgtacacagaatttgttttgctgcactaaatgatttggcctctccctatatagtccttatagc-atgtcatgacttgcgagcaatgcacatgtttttctttctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA
||||| |||||| | | |    || ||   |||||||| |||| |  |||| ||    | ||||| || |||  ||  || | ||     ||  || ||||  | |  |||||| ||        || | |  ||||  |  | | | ||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||  ||||| |||||||| ||||||||||||||||
gttatcccctttccacgtgattaacagctttaatttacatgtgaat-cagagttg---tggctgctctgaatctttcagcatttcta---atgatctttatttcgaaatcatgagtt--------tgta-acattttcttgccataccagGATGGTTATGTACCATATCATTCAGCAAGAATCGAGCTCTGCCCGGCTGCATCATCAGATAACTCAAGGAAGGGCCAAGTCTTTACAGAAATGCTCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccttatagcatgtcatgacttgcgagcaatgcacatgtttttctttctttcaagGATGGCTATGTACCATATCACTCAGCAAGAATGGAGCTCTGCCCAGCTGCATCATCGGACACCTCAAAAAAGGGTCAAGTCTTCACAGAAATGCTCAACA
                                  catgtttttctttctt  CT-rich tract
                                      tttttcttt  TA-rich tract