1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctggagggataggtcaaactgtcttgaatagaatcatgacatgccacttgggcacttgtcctgaactgaaatttacacctcaattttgtttttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTCCACACTATGGAGACACTGGTACTGAAACTGAGGTTTAAAGCAAAGATGA
species | Zea mays |
transcript | GRMZM2G159142_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAG GTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTEST: gi|211446876|gb|FL341655.1|FL341655
genomic: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAGgcaagaatga ... tttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACT
EST: GAGTTTTGCTTCTTCARACGGCTTTGCATGGGCTTGCTTCCGAATGGCAG GTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCRGCAACTTTGTCEST: gi|60393991|gb|DN226861.1|DN226861
genomic: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAGgcaagaatga ... tttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTC
EST: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAG GTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTCEST: gi|28983211|gb|BQ538510.2|BQ538510
genomic: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAGgcaagaatga ... tttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTC
EST: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAG GTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTCEST: gi|8102671|gb|AW927318.1|AW927318
genomic: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAGgcaagaatga ... tttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTC
EST: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAG GTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTC
genomic: GAGTTTTGCTTCTTCAGACGGCTTTGCATGGGCTTGCTTCCGAATGGCAGgcaagaatga ... tttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTC
acttgggcacttgtcctgaactgaaatttacacctcaattttgtttttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTCCACACTATGGAGACACTGGTACTGAAACTGAGGTTTAAAGCAAAGATGA
ttttgtttttttacc CT-rich tract
tcaattttgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggagggataggtcaaactgtcttgaatagaatcatgacatgccacttgggcacttgtcctgaactgaaatttacacctcaattttgtttttttaccagGTCTTAGTCTGCGGGATCTTGCTGGTGGTTATGGCAGTCGGCAACTTTGTCCACACTATGGAGACACTGGTACTGAAACTGAGGTTTAAAGCAAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - cttgaat
- - - - - - - - - - - - - - - - - - - acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt