1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgcagctaaatttaataatcaggattctttcagatcaaaatctgaagtaaaaaacagtaactagaagttcaaaatctgaagtaataaacagtaaccagaatggaaatccaaaggaatgagatgacgctgttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTATTGGAGCCAAACTGTGACGGCAGTGCAGCGGCGGAGAACGCTAGCAACA
species | Zea mays |
transcript | GRMZM2G158281_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTAEST: gi|91056287|gb|EB166705.1|EB166705
genomic: GGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTTTCGCTTGTGCGCTTAEST: gi|60395454|gb|DN228324.1|DN228324
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTAEST: gi|87155891|gb|DY400680.1|DY400680
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTAEST: gi|60337149|gb|DN204122.1|DN204122
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTAEST: gi|60350023|gb|DN216996.1|DN216996
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTAEST: gi|60353077|gb|DN220050.1|DN220050
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
EST: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAG GCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
genomic: GTGTGATGGAAATGCGCAAAAGTAAAATCTGGGCACGGTTCACTGTTGAGgtaatgcagc ... ttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTA
taaacagtaaccagaatggaaatccaaaggaatgagatgacgctgttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTATTGGAGCCAAACTGTGACGGCAGTGCAGCGGCGGAGAACGCTAGCAACA
cagtaac putative branch site (score: 29)
ctgttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcagctaaatttaataatcaggattctttcagatcaaaatctgaagtaaaaaacagtaactagaagttcaaaatctgaagtaataaacagtaaccagaatggaaatccaaaggaatgagatgacgctgttccatgcagGCGAACCGGGACGTAACCAGAATGGAGATCTTTCTATCGCTTGTGCGCTTATTGGAGCCAAACTGTGACGGCAGTGCAGCGGCGGAGAACGCTAGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA