1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgaatctgttcaattaaatgagttctgtggcaacacaatgatcgagagaaagcaaaagtcacatcacatcctttctcataggttacttttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAGATGGGGGATAATGTGATGCTTATAGTTGCTGAAAAAGATGATAAACTA
species | Zea mays |
transcript | GRMZM2G158097_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|71766886|gb|DR964823.1|DR964823
genomic: ACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: CTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|32841147|gb|CD980828.1|CD980828
genomic: CTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|32840869|gb|CD980550.1|CD980550
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|13389377|gb|BG462692.1|BG462692
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: AGATTTTTTGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|32841581|gb|CD981262.1|CD981262
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAEST: gi|32841639|gb|CD981320.1|CD981320
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
EST: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCA TTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
genomic: AGACACTGGGACACCTTCTATAAATTCTACCGTAACACAACTGATAATCAgtttggtttc ... ttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAA
gagagaaagcaaaagtcacatcacatcctttctcataggttacttttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAGATGGGGGATAATGTGATGCTTATAGTTGCTGAAAAAGATGATAAACTA
ttacttttc CT-rich tract
ttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaatctgttcaattaaatgagttctgtggcaacacaatgatcgagagaaagcaaaagtcacatcacatcctttctcataggttacttttcgctgcagTTGGGGCAGACCATACTTGACAAGGGATTTCTTTCACCTCTTGGGAGAAAAGATGGGGGATAATGTGATGCTTATAGTTGCTGAAAAAGATGATAAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG