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gtaagctttctgactttctccttatgacatgtgatatccaaagtttcaacttaaagctttatgcatatgtataattggcttgttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG
species | Zea mays |
transcript | GRMZM2G156800_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTACAGCCCACATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCA GATACTGTGCMCAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCAEST: gi|33094498|gb|CF054492.1|CF054492
genomic: ACTACAGCCCACATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
EST: GTACATTCATTTTCGGCAATTAAATCTCCA GATACTGTGCACAGCAGTGCAAGAGATAAAGTAACCTGGAAAAGTGATTCAEST: gi|166573023|gb|EG319912.1|EG319912
genomic: GTACATTCATTTTCGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
EST: CGGGAATTAAATCTCCA GATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCAEST: gi|33095640|gb|CF055634.1|CF055634
genomic: CGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
EST: ACATTCATTTTCGGGAATTAAATCTCCC GATACTGTGCACAGCAGTGCAAGAGATAAAGTAACCTGGAAAAGTGATTCAEST: gi|71427641|gb|DR808691.1|DR808691
genomic: ACATTCATTTTCGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
EST: ATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCA GATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCAEST: gi|60345120|gb|DN212093.1|DN212093
genomic: ATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
EST: ACTACAGCCCACATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCA GATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
genomic: ACTACAGCCCACATAGCGTTGTACATTCATTTTCGGGAATTAAATCTCCAgtaagctttc ... ttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCA
ccaaagtttcaacttaaagctttatgcatatgtataattggcttgttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG
atatgtataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttctgactttctccttatgacatgtgatatccaaagtttcaacttaaagctttatgcatatgtataattggcttgttggtgtcagGATACTGTGCACAGCAGTGCAAGAGATAAAGTACCCTGGAAAAGTGATTCATATATGAGAGGGAAACATGCAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG