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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcctcttcatatcagaagcaaattactgtttttgtagttgctcttagtggttacatattagggatattaacgtataaccgtcttcctaatcctgtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACAATGGATGAGCCAGCTACGAGACTCAAGTTAGGGATCACATCTGATGCTC

Basic information

species Zea mays
transcript GRMZM2G155312_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155312_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g53250.1 (Oryza sativa), 3'ss of exon 7
gtaaggcctcttcatatcagaagcaaattactgtttttgtagttgctcttagtggttacatattagggatattaacgtataaccgtcttcctaatcctgtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACAATGGATGAGCCAGCTACGAGACTCAAGTTAGGGATCACATCTGATGCTC
||| | ||  |  | |||| || ||| |  |||| | |||                   | || |||   ||||||  || |      ||  |||  | |    |||||||||||| || || ||||| |||||||| ||||||||||| ||||||||  | ||  |||||  |||||| ||  |||| || ||||||||||||||||
gtaggtccatt--acatcacaatcaattacctgtctctgtg-----------------tacatcagg---attaaca-atga------tctgaattttctataatcagAGGAAGAAGCAAAGACCAAGACTAACTCAAGAACTAGAAGCGTTCTGGACGTTAGACAAGCCAATTACGAGGCTGGAGTTGGGTATCACATCTGATGCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106603|gb|FL402533.1|FL402533
EST:     AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTG                         AGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
genomic: AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTGgtaaggcctc ... gtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
EST: gi|91052138|gb|EB162556.1|EB162556
EST:     AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTG                         AGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
genomic: AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTGgtaaggcctc ... gtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
EST: gi|211454500|gb|FL406359.1|FL406359
EST:     AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTG                         AGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
genomic: AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTGgtaaggcctc ... gtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
EST: gi|211521523|gb|FL409909.1|FL409909
EST:     AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTG                         AGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
genomic: AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTGgtaaggcctc ... gtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
EST: gi|67010793|gb|CO439542.1|CO439542
EST:     AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTG                         AGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA
genomic: AGATGCCTTACCAGGGACTTTCTGACACTGAAATATATGATCTGATACTGgtaaggcctc ... gtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttacatattagggatattaacgtataaccgtcttcctaatcctgtcccttcagAGGAAGAAACAGAGGCCAAGGCTAACTCAGGAACTAGAAGCATTCTGGACAATGGATGAGCCAGCTACGAGACTCAAGTTAGGGATCACATCTGATGCTC
                                tcttcctaatcctgtc  CT-rich tract
               atattaacgtataa  TA-rich tract