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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttaaattttcttgtacaacttggatttattaaaatgcattgtggcacaaatcttggcttatatgctgtatagatacatatatctgagccatacaagtttaatttacattcatacttgaaattaagggattgccagtctgatatttatttctgtttgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAAATGGGCGGGATGATGGGCCACTG

Basic information

species Zea mays
transcript GRMZM2G155123_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155123_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os05g03430.2 (Oryza sativa), 3'ss of exon 9
gtaatgttta-aattttcttgtacaacttggat--------ttattaaaatgcattgtggcacaaatcttggcttatatgctgtatagataca-tatatctgagccatacaagtttaatttacattcatacttgaaattaagggattgccagtctgatatttatttctgtt--tgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAAATGGGCGGGATGATGGGCCACTG
||| |||| |  ||||| | | |||| |||  |        |  || || |||||    ||  |||| ||| |||||||| |||  || ||   | |   ||    ||||   || |  ||    || | ||| ||| ||||  | |  | || | | |||  ||||  ||  |||||||||||| ||||||||||| |||| || || |||||||| ||||||||||||||||| ||||||||||| ||||||
gtattgttgatgattttgtagcacaatttgattcactttcatatttgaattgcatcccagcttaaatattgtcttatatgttgtgcagttatgctgttgttggttaatac---ttcacgttgg--tctttctttaaaataagttactatctgtgtaacattagtttcattttatgttcagGTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211212018|gb|FL385215.1|FL385215
EST:     AGTCCAGTTCAGGATGCAATGGCCTCAATATGCAGAATTGCAAGTGAACG                         GTATTCCTGTACGAGTAATGACCAGGCCTGGTTCTCAGTTACTAGGGATAA
genomic: AGTCCAGTTCAGGATGCAATGGCCTCAATATGCAGAATTGCAAGTGAACGgtaatgttta ... gtttgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAA
EST: gi|166577894|gb|EG036160.1|EG036160
EST:     CAGAATTGCAAGTGAACG                         GTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTTAGTTACTAGGGATAA
genomic: CAGAATTGCAAGTGAACGgtaatgttta ... gtttgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAA
EST: gi|166438554|gb|EG322330.1|EG322330
EST:     TGCAGAATTGCAAGTGAACG                         GTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAA
genomic: TGCAGAATTGCAAGTGAACGgtaatgttta ... gtttgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatacttgaaattaagggattgccagtctgatatttatttctgtttgttcagGTATTCCTGTACGAGTAATGACCAGGCCCGGTTCTCAGTTACTAGGGATAAATGGGCGGGATGATGGGCCACTG
                            gtctgat  putative branch site (score: 4)
                                        tttctgttt  putative PPT
                                 atatttatttctgttt  TA-rich tract