1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gttttgatatgtgaattgcattcaacctaaaacgtcaatgaatcgatactgtggtggagaccctacaatacatgttttctgatatatgtctcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAACGCTGTTGTATATTACTCTACATCGGTGTTCCGTAGTGCAGGCATTGC
species | Zea mays |
transcript | GRMZM2G153704_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|32832104|gb|CD971782.1|CD971782
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTTGTTTT-GTTCCAGCAGCTTGCTGGTATAEST: gi|101389575|gb|EB816720.1|EB816720
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACT-GTTTTTGTTCCAGCAGCTTGCTGGTATA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|61119088|gb|DN560049.1|DN560049
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|67035008|gb|CO463541.1|CO463541
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|60339583|gb|DN206556.1|DN206556
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|67037358|gb|CO464198.1|CO464198
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|32933856|gb|CF038668.1|CF038668
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|67011667|gb|CO440416.1|CO440416
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: TCCGAA-CCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|7844519|gb|AW787741.1|AW787741
genomic: TCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|78179345|gb|DV549718.1|DV549718
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|60358931|gb|DN225904.1|DN225904
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|7844129|gb|AW787332.1|AW787332
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|32847646|gb|CD987327.1|CD987327
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTT-GTTCCAGCAGCTTGCTGGTATAAEST: gi|32835079|gb|CD974757.1|CD974757
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAEST: gi|22545719|gb|BU098078.1|BU098078
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
EST: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAG TTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
genomic: GGAGTCCGAAGCCGGCTGGTTTGATCTTTTCAGCAAGCGTTACTGGAAAGgtattttttc ... tcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAA
atactgtggtggagaccctacaatacatgttttctgatatatgtctcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAACGCTGTTGTATATTACTCTACATCGGTGTTCCGTAGTGCAGGCATTGC
ttctgat putative branch site (score: 3)
tctcattt putative PPT
tgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgatatgtgaattgcattcaacctaaaacgtcaatgaatcgatactgtggtggagaccctacaatacatgttttctgatatatgtctcatttgcagTTGTGAGTGTGGGGGCAGCACTGTTTTTGTTCCAGCAGCTTGCTGGTATAAACGCTGTTGTATATTACTCTACATCGGTGTTCCGTAGTGCAGGCATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT