1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttagataaaccttgtgttctgtaggacagaacatatatattgttattgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT
species | Zea mays |
transcript | GRMZM2G152057_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAAEST: gi|148964082|gb|EE015236.2|EE015236
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAAEST: gi|149101434|gb|EE187553.2|EE187553
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAAEST: gi|60347954|gb|DN214927.1|DN214927
genomic: TATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
EST: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAG AGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
genomic: TGAAATTTGAGTATGATACATCTAGCCCTGAGCATATCAATGCTATCAAGgtaggccctt ... ttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAA
attgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT
tatttttttt CT-rich tract
tcataatttgttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagataaaccttgtgttctgtaggacagaacatatatattgttattgctcagttaccaccacaccactcataatttgttatgaatattttttttgtagAGAATTGATCATGTCAACTATCAAATGGAGCACAGGACAGAGTGGTGCCAATGCAATGGTACCTCGGCCCCATGTTTTTTATTTGCCAGGAAGTTCTCCT
- - - - - - - -tgttctg
- - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - tattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -taccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccact